Statistical Inference and Modeling for High-throughput Experiments

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Statistical Inference and Modeling for High-throughput Experiments

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Harvard University, the Massachusetts Institute of Technology, and the University of California, Berkeley, are just some of the schools that you have at your fingertips with edX. Through massive open online courses (MOOCs) from the world's best universities, you can develop your knowledge in literature, math, history, food and nutrition, and more. These online classes are taught by highly-regarded experts in the field. If you take a class on computer science through Harvard, you may be taught by David J. Malan, a senior lecturer on computer science at Harvard University for the School of Engineering and Applied Sciences. But there's not just one professor - you have access to the entire teaching staff, allowing you to receive feedback on assignments straight from the experts. Pursue a Verified Certificate to document your achievements and use your coursework for job and school applications, promotions, and more. EdX also works with top universities to conduct research, allowing them to learn more about learning. Using their findings, edX is able to provide students with the best and most effective courses, constantly enhancing the student experience.

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Business & Management
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Course Description

In this course you’ll learn various statistics topics including multiple testing problem, error rates, error rate controlling procedures, false discovery rates, q-values and exploratory data analysis. We then introduce statistical modeling and how it is applied to high-throughput data. In particular, we will discuss parametric distributions, including binomial, exponential, and gamma, and describe maximum likelihood estimation. We provide several examples of how these concepts are applied in next generation sequencing and microarray data. Finally, we will discuss hierarchical models and empirical bayes along with some examples of how these are used in practice. We provide R programming examples in a way that will help make the connection between concepts and implementation.

Given the diversity in educational background of our students we have divided the series into seven parts. You can take the entire series or individual courses...

In this course you’ll learn various statistics topics including multiple testing problem, error rates, error rate controlling procedures, false discovery rates, q-values and exploratory data analysis. We then introduce statistical modeling and how it is applied to high-throughput data. In particular, we will discuss parametric distributions, including binomial, exponential, and gamma, and describe maximum likelihood estimation. We provide several examples of how these concepts are applied in next generation sequencing and microarray data. Finally, we will discuss hierarchical models and empirical bayes along with some examples of how these are used in practice. We provide R programming examples in a way that will help make the connection between concepts and implementation.

Given the diversity in educational background of our students we have divided the series into seven parts. You can take the entire series or individual courses that interest you. If you are a statistician you should consider skipping the first two or three courses, similarly, if you are biologists you should consider skipping some of the introductory biology lectures. Note that the statistics and programming aspects of the class ramp up in difficulty relatively quickly across the first three courses. By the third course will be teaching advanced statistical concepts such as hierarchical models and by the fourth advanced software engineering skills, such as parallel computing and reproducible research concepts.

These courses make up 2 XSeries and are self-paced:

PH525.1x: Statistics and R for the Life Sciences

PH525.2x: Introduction to Linear Models and Matrix Algebra

PH525.3x: Statistical Inference and Modeling for High-throughput Experiments

PH525.4x: High-Dimensional Data Analysis

PH525.5x: Introduction to Bioconductor: annotation and analysis of genomes and genomic assays 

PH525.6x: High-performance computing for reproducible genomics

PH525.7x: Case studies in functional genomics


This class was supported in part by NIH grant R25GM114818.

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Reviews 9/10 stars
2 Reviews for Statistical Inference and Modeling for High-throughput Experiments

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Angela Liu profile image
Angela Liu profile image

Angela Liu

10/10 starsCompleted
2 years, 4 months ago
As a biology PhD candidate, I must to say this course help me more than any courses I learned from my campus. It's obviously that the instructors and providers spend a lot of effort to design this course. Their effort make the course full of must-learn concepts but easily to catch on. Since I have poor knowledge of Coding Language and statistics, I used to think it seemed impossible for me to learn these things in my spare time. Now, this course rekindled my interest and I will keep on learning. Thank you for all your efforts. Last but not least, I hope you can re-check the book page materials because there some mistakes which will mislead learners.
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Eric Rodriguez Mendoza profile image
Eric Rodriguez Mendoza profile image

Eric Rodriguez Mendoza

10/10 starsTaking Now
2 years, 6 months ago
BS"D For an economist like me this course is a great opportunity for improving knowledges adquired during Pre-grade time.
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